Basic Information
Locus ID:
Chr03G015050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 48621314 | 48636371 | - | Chr03G015050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 193 | 248 | 3.5E-16 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 7.4E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 192 | 2.5E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 139 | 6.93E-17 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 214 | 250 | 4.0E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 191 | 1.5E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 146 | 188 | 9.0E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 8 | 81 | 11.360643 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 145 | 27.82494 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 189 | 10.143551 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.4 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021311671.1 | E3 ubiquitin-protein ligase MIEL1-like [Sorghum bicolor] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835BCQ6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Digitaria exilis OX=1010633 GN=HU200_037145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology