Basic Information
Locus ID:
Chr03G011250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 38877249 | 38881312 | - | Chr03G011250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 463 | 596 | 7.98922E-20 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 465 | 595 | 5.1E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 617 | 658 | 4.0E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 133 | 304 | 8.83E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 424 | 646 | 4.11E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 424 | 705 | 2.3E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 597 | 695 | 2.3E-93 | - |
| SMART | SM00382 | AAA_5 | 461 | 598 | 2.6E-18 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 568 | 587 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 694 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004969211.1 | ribosome biogenesis ATPase RIX7 isoform X2 [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A835KTK8 | AAA domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_002878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology