Basic Information
Locus ID:
Chr03G009970
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 34976653 | 34986032 | - | Chr03G009970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 243 | 283 | 4.9397E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 242 | 288 | 4.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 289 | 3.03E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 292 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 282 | 2.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 283 | 11.530333 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039847647.1 | probable E3 ubiquitin-protein ligase LUL2 isoform X1 [Panicum virgatum] | 0 |
| Q9LFH6 | Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UC83 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_30430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology