Basic Information
Locus ID:
Chr03G008880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 29942532 | 29947899 | - | Chr03G008880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 368 | 497 | 7.55315E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 173 | 342 | 1.0E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 379 | 488 | 6.1E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 55 | 5.99E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 221 | 504 | 2.64E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 360 | 530 | 9.9E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 124 | 359 | 5.8E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 62 | 1.2E-5 | - |
| SMART | SM00490 | helicmild6 | 408 | 488 | 1.8E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.2E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 168 | 371 | 6.2E-62 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 149 | 177 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.955 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 383 | 527 | 25.472027 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 180 | 354 | 30.119484 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 300 | 308 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 109 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology