Basic Information
Locus ID:
Chr03G008450
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 26974275 | 26995723 | + | Chr03G008450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 860 | 1123 | 4.15438E-63 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 270 | 541 | 1.46995E-76 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 571 | 767 | 4.03735E-82 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1146 | 1354 | 5.11601E-103 | - |
| Pfam | PF00005 | ABC transporter | 1165 | 1301 | 2.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 599 | 719 | 2.2E-10 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 270 | 520 | 3.3E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 866 | 1075 | 3.4E-17 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 862 | 1130 | 1.18E-39 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 599 | 779 | 4.18E-37 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1139 | 1362 | 4.44E-59 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 546 | 2.35E-26 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1131 | 1372 | 1.0E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 560 | 807 | 9.3E-52 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 828 | 1129 | 2.5E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 257 | 550 | 5.5E-38 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1174 | 1347 | 0.0029 | IPR003593 |
| SMART | SM00382 | AAA_5 | 604 | 775 | 1.4E-8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1148 | 1370 | 15.993206 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 571 | 790 | 16.526749 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 270 | 533 | 26.6196 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 862 | 1111 | 25.705027 | IPR011527 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VEZ3 | ABC transporter C family member 15 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology