Basic Information
Locus ID:
Chr03G007660
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 18419259 | 18421666 | + | Chr03G007660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 249 | 562 | 8.6E-63 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 217 | 590 | 2.84E-92 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 205 | 597 | 1.9E-86 | IPR012334 |
| SMART | SM00710 | pbh1 | 356 | 405 | 700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 432 | 452 | 1100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 462 | 483 | 5.9 | IPR006626 |
| SMART | SM00710 | pbh1 | 491 | 521 | 8400.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 439 | 452 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 126 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9ULV6 | Polygalacturonase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26648 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology