Basic Information
Locus ID:
Chr03G007030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 14552482 | 14554337 | + | Chr03G007030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 106 | 429 | 1.1E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 81 | 460 | 2.67E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 70 | 463 | 5.1E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 321 | 342 | 11.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 350 | 371 | 6900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 240 | 266 | 180.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 290 | 311 | 1000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 267 | 288 | 660.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | NP_001150436.2 | polygalacturonase precursor [Zea mays] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9EY08 | Polygalacturonase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology