Basic Information
Locus ID:
Chr03G006140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 9633433 | 9634089 | + | Chr03G006140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 76 | 108 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 149 | 8.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 155 | 4.88E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 162 | 9.7E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 29 | 66 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 150 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 110 | 0.0019 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 80 | 119 | 9.706414 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 0 |
| RefSeq | XP_004968472.1 | zinc finger CCCH domain-containing protein 17 [Setaria italica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UCN2 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology