Basic Information
Locus ID:
Chr03G005830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
chromatin binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 8491442 | 8493366 | - | Chr03G005830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36960.1 | TSL-kinase interacting protein 1. Arabidopsis thaliana myb/SANT domain protein | 0 |
| RefSeq | XP_004968436.1 | TSL-kinase interacting protein 1 [Setaria italica] | 0 |
| Q8LJT8 | TSL-kinase interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=TKI1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UD55 | TSL-kinase interacting protein 1-like OS=Eragrostis curvula OX=38414 GN=EJB05_31133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16966, jg39449 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8211 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027170 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12549, Sbi_jg53386 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8545 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022990 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33706, Sgl39017 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002293, gene:ENSEOMG00000003245 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022760, CQ.Regalona.r1.6BG0024040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043970 |
| Apiaceae | Apium graveolens | 1 | Ag4G01305 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000450, COCNU_15G004740 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704772, gene-LOC103710821 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.791.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G02973 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39380.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024889m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1847 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1911 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g00700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g13710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10183, nbisL1-mrna-2312 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.782 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014410 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G36809, Lb1G00865, Lb1G06101, Lb8G36394, Lb8G36656 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.398, BH02.426, CH02.469 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012280, gene-QOZ80_1BG0060950 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0238350.1, HORVU.MOREX.r3.7HG0636590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050325 |
| Poaceae | Oryza coarctata | 4 | Oco01G003480, Oco02G003510, Oco13G013640, Oco14G014420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g08680.2, LOC_Os07g44030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G039000, gene-BS78_05G057400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200141 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G005830, Chr05G011210, Chr08G006270, Chr0G004580 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G200400, Tel7E01G045500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG014490, gene_TRIDC3BG019010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G116900.2, TraesCS3B02G135900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb122120_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7743 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.325, evm.TU.LG15.632 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g11230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1609 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17576 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3036 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12171 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.965 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008108 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15078 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4471 |
| Salicaceae | Populus euphratica | 3 | populus_peu13882, populus_peu23050, populus_peu23061 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614363 |
| Solanaceae | Solanum chilense | 1 | SOLCI002675300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015961 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.4338_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0353 |
| Zosteraceae | Zostera marina | 1 | Zosma05g14400.v3.1 |