Basic Information
Locus ID:
Chr03G005610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 8090547 | 8091887 | + | Chr03G005610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 82 | 438 | 3.4071E-85 | IPR034161 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 83 | 266 | 4.0E-48 | IPR032861 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 290 | 434 | 2.4E-25 | IPR032799 |
| SUPERFAMILY | SSF50630 | Acid proteases | 78 | 438 | 5.2E-86 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 66 | 266 | 1.1E-44 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 272 | 440 | 6.7E-41 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 83 | 434 | 43.062088 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 98 | 109 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 311 | 322 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 311 | 322 | 3.2E-7 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 410 | 425 | 3.2E-7 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 89 | 109 | 3.2E-7 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64830.1 | Eukaryotic aspartyl protease family protein. | 0 |
| RefSeq | XP_039852063.1 | aspartic proteinase CDR1-like [Panicum virgatum] | 0 |
| Q6XBF8 | Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PD23 | Peptidase A1 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS26788 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology