Basic Information
Locus ID:
Chr03G005210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 6800195 | 6806795 | + | Chr03G005210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 829 | 1.58933E-107 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 933 | 1227 | 5.29071E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1250 | 1470 | 2.69671E-118 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 603 | 1.33716E-92 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 318 | 582 | 1.5E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1269 | 1417 | 1.0E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 935 | 1176 | 3.2E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 1.5E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 921 | 1233 | 3.14E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 611 | 4.19E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1241 | 1482 | 7.1E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 626 | 851 | 4.72E-55 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 894 | 1233 | 1.8E-64 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1236 | 1488 | 5.8E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 614 | 862 | 6.5E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 289 | 611 | 4.9E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1278 | 1469 | 1.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 656 | 829 | 6.9E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 595 | 30.264585 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 935 | 1215 | 37.349201 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1252 | 1486 | 16.666805 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 23.182711 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 907 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596584.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UFR8 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_5G119400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology