Basic Information
Locus ID:
Chr03G004340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Prenyltransferase and squalene oxidase repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 5183439 | 5189797 | + | Chr03G004340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02895 | GGTase-I | 11 | 328 | 4.59396E-122 | IPR041960 |
| Pfam | PF00432 | Prenyltransferase and squalene oxidase repeat | 105 | 123 | 0.38 | IPR001330 |
| Pfam | PF00432 | Prenyltransferase and squalene oxidase repeat | 178 | 221 | 5.0E-16 | IPR001330 |
| Pfam | PF04387 | Protein tyrosine phosphatase-like protein, PTPLA | 392 | 553 | 7.0E-60 | IPR007482 |
| Pfam | PF00432 | Prenyltransferase and squalene oxidase repeat | 286 | 329 | 6.2E-9 | IPR001330 |
| Pfam | PF00432 | Prenyltransferase and squalene oxidase repeat | 242 | 280 | 3.5E-9 | IPR001330 |
| Pfam | PF00432 | Prenyltransferase and squalene oxidase repeat | 139 | 173 | 0.029 | IPR001330 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 4 | 332 | 1.45E-87 | IPR008930 |
| Gene3D | G3DSA:1.50.10.20 | - | 8 | 350 | 5.7E-113 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39550.1 | Prenyltransferase family protein. encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. | 0 |
| RefSeq | XP_025815717.1 | LOW QUALITY PROTEIN: geranylgeranyl transferase type-1 subunit beta-like [Panicum hallii] | 0 |
| O80642 | Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana OX=3702 GN=GGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UDX5 | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Eragrostis curvula OX=38414 GN=EJB05_31574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28772, jg981 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24166 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027189 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12563, Sbi_jg53372 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8555 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33694, Sgl39006 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000776, gene:ENSEOMG00000002824 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022900, CQ.Regalona.r1.6BG0024210 |
| Apiaceae | Apium graveolens | 1 | Ag3G01657 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703452 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_05.1363.V1.1, AsparagusV1_05.3558.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G13914, Ftri6G32666 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10480.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014620m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051430.2N, BniB08g004710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2179 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007498, Pov_00028766 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27914 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.661, AH02.663, BH02.668, BH02.669, CH02.764, CH02.765 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0009760, gene-QOZ80_1AG0009770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0230910.1, HORVU.MOREX.r3.3HG0230930.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018651, gene-QYE76_048590, gene-QYE76_058390 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G001960, Oco01G001970, Oco02G001950, Oco02G001960 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os01g05694.1, LOC_Os01g05710.1, LOC_Os01g05720.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G063900, gene-BS78_03G064000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205832, Pt_Chr0205833, Pt_Chr0205834, Pt_Chr0601176 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G023470, Chr03G004340 |
| Poaceae | Thinopyrum elongatum | 9 | Tel3E01G136600, Tel3E01G137200, Tel3E01G899100 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3AG008980, gene_TRIDC3AG075370 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS1D02G051800.1, TraesCS3A02G075100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124340_P001, Zm00001eb335910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13029, nbis-gene-6947 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9971 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1463, evm.TU.LG12.129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1113 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-871 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2365 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.576 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6142 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1800 |
| Salicaceae | Populus euphratica | 1 | populus_peu23715 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614571, gene-LOC132614748 |
| Solanaceae | Solanum chilense | 2 | SOLCI004953200, SOLCI005252800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002947, gene-LOC107018380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16418_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0202 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30750.v3.1 |