Basic Information
Locus ID:
Chr03G002470
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 2432677 | 2440635 | + | Chr03G002470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 310 | 437 | 3.86002E-59 | - |
| CDD | cd18635 | CD_CMT3_like | 570 | 623 | 3.04498E-26 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 571 | 624 | 6.3E-13 | IPR023780 |
| Pfam | PF01426 | BAH domain | 313 | 435 | 1.7E-14 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 633 | 992 | 3.9E-32 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 469 | 995 | 3.81E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 558 | 632 | 1.07E-16 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 470 | 1013 | 1.0E-264 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 787 | 961 | 1.0E-264 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 256 | 421 | 1.1E-52 | IPR043151 |
| SMART | SM00439 | BAH_4 | 311 | 436 | 9.7E-21 | IPR001025 |
| SMART | SM00298 | chromo_7 | 570 | 627 | 5.0E-12 | IPR000953 |
| PIRSF | PIRSF037404 | DNMT1 | 916 | 1006 | 1.4E-21 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 614 | 886 | 6.7E-41 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 292 | 455 | 3.1E-8 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 440 | 537 | 6.3E-4 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 123 | 255 | 560.0 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 311 | 436 | 18.409992 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 468 | 1002 | 44.562794 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 571 | 625 | 14.096001 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 639 | 651 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 592 | 612 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 728 | 741 | 3.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 682 | 696 | 3.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 469 | 485 | 3.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 269 | - | - |
| Coils | Coil | Coil | 214 | 234 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_004983483.1 | DNA (cytosine-5)-methyltransferase 3 [Setaria italica] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology