Basic Information
Locus ID:
Chr03G001410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
UBA/TS-N domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 1229555 | 1231012 | - | Chr03G001410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 86 | 121 | 5.3E-10 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 69 | 125 | 2.07E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 48 | 127 | 1.7E-12 | - |
| SMART | SM00165 | uba_6 | 86 | 123 | 3.9E-8 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 84 | 124 | 13.462584 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 79 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_004967730.1 | rhomboid-like protein 20 [Setaria italica] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6MQK4 | Rhomboid-like protein 20 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d040411 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3799, jg4236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1726.V1.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G127900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G001410 |