Basic Information
Locus ID:
Chr02G030640
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin ligase SUD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 62203671 | 62217054 | - | Chr02G030640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16702 | RING_CH-C4HC3_MARCH6 | 24 | 73 | 3.37034E-29 | - |
| Pfam | PF12906 | RING-variant domain | 25 | 71 | 7.2E-15 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 75 | 1.06E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 83 | 2.6E-22 | IPR013083 |
| SMART | SM00744 | ringv_2 | 24 | 72 | 1.4E-19 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 72 | 8.623992 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 17 | 78 | 23.280397 | IPR011016 |
| Coils | Coil | Coil | 237 | 271 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025810957.1 | probable E3 ubiquitin ligase SUD1 [Panicum hallii] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7DW65 | RING-CH-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G074100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1099, jg28660 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21757 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009959 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g224330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11147, Sbi_jg46116 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005489 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55747, Sgl60962 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018737, gene:ENSEOMG00000037088 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0005070, CQ.Regalona.r1.9AG0019420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30213710 |
| Apiaceae | Apium graveolens | 2 | Ag2G01473, Ag9G00155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G007770, scaffold000191G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706508, gene-LOC103711508 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3253.V1.1, AsparagusV1_Unassigned.826.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G00544, Ftri15G00836, Ftri7G33574, Ftri8G10188 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022448m.g.v1.0, Thhalv10024280m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp7g31810.v2.2, SpUn0912_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g004180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2110 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2334 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g02170, gene.Cymno17g04670 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25640 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1108, evm.TU.LG08.500 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012304 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17544, Lb7G33885 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2404, BH06.2201, CH06.2419 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545980, gene-QOZ80_6BG0499380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0746090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036733 |
| Poaceae | Oryza coarctata | 2 | Oco11G013560, Oco12G013700 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43210.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G202600, gene-BS78_K255500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401639, Pt_Chr0401658 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G030640, Chr05G008390, Chr10G018680, Chr11G003910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G913300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG073430 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G524600.2, TraesCS7B02G442100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb275450_P001, Zm00001eb387290_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40933, nbis-gene-9944 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30868, Zma_g33119 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1466, evm.TU.LG08.866, evm.TU.LG09.425 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4858 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17147 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9802 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.752 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005318 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2508 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6054 |
| Salicaceae | Populus euphratica | 2 | populus_peu01516, populus_peu36318 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599023 |
| Solanaceae | Solanum chilense | 1 | SOLCI000181600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002825 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11587_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0314 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23310.v3.1 |