Basic Information
Locus ID:
Chr02G028440
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 59842522 | 59843207 | + | Chr02G028440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 157 | 199 | 4.21178E-17 | - |
| Pfam | PF13639 | Ring finger domain | 157 | 199 | 1.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 205 | 5.44E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 205 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 198 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.577796 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813027.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum hallii] | 0 |
| Q8RX29 | RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TBK6 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology