Basic Information
Locus ID:
Chr02G028420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 59836627 | 59837312 | + | Chr02G028420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 91 | 119 | 1.3E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 122 | 1.5E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 121 | 5.1E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 119 | 8.742016 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 209 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813029.1 | putative RING-H2 finger protein ATL71 [Panicum hallii] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9TDL5 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1880, CH06.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541850, gene-QOZ80_6BG0495050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709240.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034106 |
| Poaceae | Oryza coarctata | 2 | Oco02G015940, Oco12G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400173 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028420, Chr05G006110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048590, gene_TRIDC7BG038780 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G234600.1.cds1, TraesCS7D02G330600.1.cds1 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30646 |