Basic Information
Locus ID:
Chr02G025080
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Helix-loop-helix DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 55472348 | 55473690 | + | Chr02G025080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11454 | bHLH_AtIND_like | 200 | 261 | 5.22636E-34 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 208 | 248 | 1.1E-6 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 200 | 258 | 2.22E-12 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 199 | 260 | 1.7E-9 | IPR036638 |
| SMART | SM00353 | finulus | 204 | 253 | 2.7E-10 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 198 | 247 | 14.271667 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37800.1 | RHD SIX-LIKE 1. | 0 |
| RefSeq | XP_025819067.1 | transcription factor bHLH83-like [Panicum hallii] | 0 |
| Q9FJ00 | Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UEX3 | BHLH domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_31916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39856 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16650 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027790 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21632, Sbi_jg21633, Sbi_jg22179, Sbi_jg22180 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16110, Seu_jg16111 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008720 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62661, Sgl67220, Sgl67283 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017690, gene:ENSEOMG00000050543 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018380, CQ.Regalona.r1.2BG0020060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190640 |
| Apiaceae | Apium graveolens | 1 | Ag4G00567 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G009790, scaffold028730G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705872 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.588.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09934 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G66470.1, AT5G37800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018927m.g.v1.0, Thhalv10028239m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g21530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043680.2N, BniB05g062460.2N, BniB06g060670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0660 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0635 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g10250, gene.Cymno11g02570 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g22550, gene.Thate03g02770, gene.Thate06g12630 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2639 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.572 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029833 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01956, Lb3G20904 |
| Poaceae | Echinochloa crus-galli | 11 | AH02.1149, AH06.1408, AH07.3182, BH02.958, BH06.1410 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0006930, gene-QOZ80_1BG0055630 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0219210.1, HORVU.MOREX.r3.6HG0608460.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_024696, gene-QYE76_024698, gene-QYE76_024734 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G000540, Oco02G000630, Oco03G019560, Oco04G020340 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g02110.1, LOC_Os02g48060.1, LOC_Os06g30090.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G091200, gene-BS78_04G250700 |
| Poaceae | Puccinellia tenuiflora | 10 | Pt_Chr0205892, Pt_Chr0205893, Pt_Chr0205894, Pt_Chr0206569 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G025080, Chr05G002840, Chr06G003910, Chr08G002060 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel6E01G504700, Tel6E01G504800, Tel6E01G505100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG002260, gene_TRIDC3BG001200 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G006300.1, TraesCS3B02G007700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252360_P001, Zm00001eb334500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22068, nbis-gene-32309, nbis-gene-7156 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14256, Zma_g17000, Zma_g7490 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.741, evm.TU.LG06.814, evm.TU.LG11.35 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19150, gene.Posoc04g04750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60356.4, evm.TU.Scaffold_3_RagTag.737 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1223 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2783, nbisL1-mrna-6579 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1115, nbisL1-mrna-6418 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.834, evm.TU.utg000019l.765 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012838 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5233 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13161 |
| Salicaceae | Populus euphratica | 2 | populus_peu09639, populus_peu24882 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623396 |
| Solanaceae | Solanum chilense | 1 | SOLCI000509400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010630 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0182 |
| Zosteraceae | Zostera marina | 3 | Zosma01g06840.v3.1, Zosma05g26160.v3.1, Zosma06g00510.v3.1 |