Basic Information
Locus ID:
Chr02G023600
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 52945939 | 52947310 | + | Chr02G023600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 187 | 1.3E-61 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 4 | 109 | 2.0E-32 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 111 | 185 | 8.0E-24 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 260 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021311754.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Sorghum bicolor] | 0 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A811PC88 | Ubiquitin fusion degradation protein 1 homolog OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS26508 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology