Basic Information
Locus ID:
Chr02G023020
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 52095934 | 52099527 | + | Chr02G023020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 387 | 569 | 2.11779E-84 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 23 | 189 | 1.6694E-87 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 222 | 339 | 2.8E-22 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 433 | 557 | 7.0E-17 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 20 | 193 | 1.8E-35 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 217 | 363 | 9.82E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 387 | 581 | 3.4E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 20 | 204 | 8.34E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 380 | 571 | 6.9E-58 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 211 | 374 | 1.4E-43 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 17 | 198 | 1.8E-57 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 14 | 581 | 1.4E-211 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_034597987.1 | pyruvate decarboxylase 1-like [Setaria viridis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4U6UIF8 | pyruvate decarboxylase OS=Setaria viridis OX=4556 GN=SEVIR_5G110400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology