Basic Information
Locus ID:
Chr02G020610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 45639594 | 45642678 | + | Chr02G020610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 72 | 88 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 228 | 3.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 70 | 308 | 3.11E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 52 | 186 | 3.3E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 321 | 9.7E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 128 | 165 | 280.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 238 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 97 | 10.274523 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_002457205.1 | zinc finger CCCH domain-containing protein 17 [Sorghum bicolor] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UCN2 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology