Basic Information
Locus ID:
Chr02G019760
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 42127327 | 42138177 | + | Chr02G019760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 677 | 987 | 9.44023E-69 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 385 | 585 | 1.00461E-106 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 72 | 359 | 1.58789E-93 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 680 | 940 | 4.2E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 76 | 338 | 1.2E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1044 | 1182 | 6.7E-21 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 403 | 537 | 1.3E-16 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1033 | 1231 | 6.21E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 381 | 607 | 2.77E-52 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 61 | 366 | 3.4E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 665 | 993 | 1.06E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 361 | 622 | 2.5E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 60 | 360 | 5.6E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 996 | 1237 | 4.4E-41 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 639 | 993 | 3.9E-51 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1053 | 1218 | 1.5E-8 | IPR003593 |
| SMART | SM00382 | AAA_5 | 412 | 585 | 2.8E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 71 | 351 | 30.905357 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 679 | 932 | 28.509592 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 385 | 608 | 21.875528 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1012 | 1235 | 12.685232 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 510 | 524 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 651 | - | - |
| Coils | Coil | Coil | 634 | 654 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_004968378.2 | ABC transporter C family member 3 [Setaria italica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | K3XDS0 | ABC transporter C family member 3 OS=Setaria italica OX=4555 GN=101777732 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology