Basic Information
Locus ID:
Chr02G019670
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 41751055 | 41763717 | - | Chr02G019670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 160 | 234 | 7.9426E-32 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 161 | 238 | 2.2E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 5 | 134 | 1.5E-32 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 13 | 241 | 3.7E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 152 | 4.6E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 244 | 2.0E-28 | IPR027417 |
| SMART | SM00487 | ultradead3 | 1 | 163 | 1.8E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 179 | 246 | 2.3E-7 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 153 | 246 | 15.408659 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 146 | 24.536272 | IPR014001 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.4 | - | 0 |
| RefSeq | XP_035821833.1 | putative DEAD-box ATP-dependent RNA helicase family protein isoform X2 [Zea mays] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UD36 | DEAD-box ATP-dependent RNA helicase 14 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31261 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology