Basic Information
Locus ID:
Chr02G016840
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
HD1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 26189774 | 26191210 | + | Chr02G016840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 25 | 342 | 7.94092E-152 | - |
| Pfam | PF00850 | Histone deacetylase domain | 39 | 340 | 4.8E-81 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 20 | 378 | 8.63E-106 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 18 | 405 | 1.0E-122 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 6 | 474 | 2.3E-155 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 177 | 193 | 3.9E-27 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 255 | 273 | 3.9E-27 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 238 | 251 | 3.9E-27 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 41 | 58 | 3.9E-27 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 190 | 205 | 1.3E-21 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 158 | 181 | 1.3E-21 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 277 | 287 | 1.3E-21 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 136 | 156 | 3.9E-27 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38130.2 | histone deacetylase 1. Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. | 0 |
| RefSeq | XP_025815443.1 | histone deacetylase 2-like [Panicum hallii] | 0 |
| Q6YV04 | Histone deacetylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VH47 | histone deacetylase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology