Basic Information
Locus ID:
Chr02G016040
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 24040309 | 24040998 | + | Chr02G016040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 155 | 217 | 7.2638E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 74 | 134 | 2.0E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 154 | 216 | 1.6E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 65 | 217 | 1.01E-37 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 146 | 223 | 6.4E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 68 | 137 | 4.3E-18 | - |
| SMART | SM00054 | efh_1 | 155 | 183 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 191 | 219 | 6.9E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 75 | 103 | 0.011 | IPR002048 |
| SMART | SM00054 | efh_1 | 112 | 140 | 0.051 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 187 | 222 | 13.14653 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 108 | 143 | 10.998585 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 71 | 106 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 151 | 186 | 15.071314 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 164 | 176 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 200 | 212 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 84 | 96 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 121 | 133 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_039810585.1 | probable calcium-binding protein CML12 [Panicum virgatum] | 0 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VEW3 | Calcium-binding protein CML15 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology