Basic Information
Locus ID:
Chr02G015510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
VFB1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 22730597 | 22731669 | - | Chr02G015510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 78 | 113 | 5.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 116 | 1.31E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 77 | 113 | 9.2E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67250.1 | SKP1/ASK1-interacting protein 2. Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | 0 |
| RefSeq | XP_002462047.1 | F-box protein At1g47056 [Sorghum bicolor] | 0 |
| Q9FE83 | F-box protein SKIP2 OS=Arabidopsis thaliana OX=3702 GN=SKIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9JTB6 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr02G015510.