Basic Information
Locus ID:
Chr02G012260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 14756391 | 14765814 | + | Chr02G012260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 109 | 226 | 1.23181E-10 | - |
| CDD | cd12108 | Hr-like | 421 | 580 | 3.24256E-27 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 419 | 581 | 3.4E-6 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 759 | 827 | 1.9E-13 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 752 | 808 | 4.05E-12 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 416 | 602 | 2.5E-22 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 107 | 244 | 3.8E-13 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 752 | 814 | 18.668045 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 341 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK57 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology