Basic Information
Locus ID:
Chr02G008190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
CT11-RanBPM
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 8611017 | 8622218 | + | Chr02G008190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 390 | 516 | 2.12077E-43 | IPR033734 |
| CDD | cd09612 | Jacalin | 200 | 329 | 2.39511E-40 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 387 | 516 | 7.3E-29 | IPR001229 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 2 | 88 | 1.2E-18 | IPR024964 |
| Pfam | PF01419 | Jacalin-like lectin domain | 200 | 329 | 1.5E-26 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 185 | 329 | 1.44E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 374 | 516 | 4.45E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 179 | 329 | 9.0E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 367 | 516 | 4.4E-50 | IPR036404 |
| SMART | SM00757 | toby_final6 | 19 | 107 | 4.8E-12 | IPR013144 |
| SMART | SM00915 | Jacalin_2 | 387 | 517 | 1.6E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 200 | 331 | 1.1E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 189 | 331 | 46.359325 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 376 | 517 | 49.885906 | IPR001229 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 23 | 9.200998 | IPR006595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_025819306.1 | jacalin-related lectin 3 [Panicum hallii] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VHD9 | Jacalin-type lectin domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16773 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology