Basic Information
Locus ID:
Chr02G007960
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 8305819 | 8313141 | - | Chr02G007960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 262 | 1.13842E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 8.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 88 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 2.1E-10 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 665 | 821 | 1.1E-42 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 266 | 6.54E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 183 | 305 | 4.1E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 182 | 5.5E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 8.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 5.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.817396 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.860455 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.922199 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.919653 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 826 | 18.948801 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 400 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025817912.1 | katanin p80 WD40 repeat-containing subunit B1 homolog [Panicum hallii] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VFY5 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eragrostis curvula OX=38414 GN=EJB05_16752 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology