Basic Information
Locus ID:
Chr02G004970
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
MYB3R-5
Description:
Myb-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 5046067 | 5048741 | - | Chr02G004970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00311 | TIM | 6 | 240 | 3.61982E-61 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 185 | 239 | 7.7E-5 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 7 | 157 | 2.4E-30 | IPR000652 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 3 | 240 | 1.7E-49 | IPR035990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 248 | 2.9E-67 | IPR013785 |
| TIGRFAM | TIGR00419 | tim: triose-phosphate isomerase | 7 | 234 | 1.2E-40 | IPR000652 |
| ProSiteProfiles | PS51440 | Triosephosphate isomerase (TIM) family profile. | 5 | 241 | 34.647125 | IPR000652 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55440.1 | triosephosphate isomerase. Encodes triosephosphate isomerase. | 0 |
| RefSeq | NP_001147215.1 | triosephosphate isomerase, cytosolic [Zea mays] | 0 |
| P21820 | Triosephosphate isomerase, cytosolic OS=Coptis japonica OX=3442 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835FVQ4 | Triosephosphate isomerase, cytosolic OS=Digitaria exilis OX=1010633 GN=HU200_004768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology