Basic Information
Locus ID:
Chr02G004610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 4474702 | 4478333 | + | Chr02G004610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 107 | 159 | 1.61336E-10 | - |
| Pfam | PF12906 | RING-variant domain | 107 | 158 | 8.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 161 | 2.58E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 166 | 1.3E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 106 | 159 | 4.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 99 | 165 | 17.597502 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002458768.1 | uncharacterized protein LOC8060098 isoform X1 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9VLZ6 | RING-CH-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_18422 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology