Basic Information
Locus ID:
Chr02G001700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 1437343 | 1441037 | + | Chr02G001700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 331 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 282 | 0.24 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 88 | 410 | 1.07E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 55 | 409 | 4.4E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 75 | 112 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 331 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 200 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 130.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | K3XHQ6 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology