Basic Information
Locus ID:
Chr02G001220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000002 | 1014244 | 1030282 | + | Chr02G001220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 160 | 372 | 3.1E-70 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 87 | 143 | 1.4E-6 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 87 | 358 | 6.58E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 433 | 4.3E-82 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 114 | 296 | 18.181194 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 305 | 377 | 16.770561 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 196 | 225 | 3.9E-48 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 401 | 418 | 3.9E-48 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 229 | 258 | 3.9E-48 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 348 | 377 | 3.9E-48 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 314 | 342 | 3.9E-48 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 267 | 296 | 3.9E-48 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_004971229.1 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Setaria italica] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VF85 | RECA_2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology