Basic Information
Locus ID:
Chr01G038560
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 72636272 | 72639927 | - | Chr01G038560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 189 | 465 | 6.24476E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 429 | 465 | 5.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 380 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 335 | 2.5E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 219 | 276 | 1.2E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 181 | 476 | 3.39E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 162 | 470 | 3.1E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 209 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 0.065 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 465 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 380 | 6.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 423 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 0.089 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 466 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 303 | 335 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 335 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 466 | 14.41838 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 452 | 466 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_039826334.1 | protein FIZZY-RELATED 2-like [Panicum virgatum] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMT1 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08215 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology