Basic Information
Locus ID:
Chr01G037340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 71591534 | 71593543 | - | Chr01G037340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 190 | 248 | 7.1E-27 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 3.4E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 7 | 88 | 1.2E-17 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 4 | 77 | 1.96E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 188 | 1.06E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 79 | 135 | 1.28E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 207 | 2.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 214 | 256 | 6.0E-20 | - |
| SMART | SM00184 | ring_2 | 143 | 185 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 11.840146 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 76 | 23.587482 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 78 | 142 | 33.61718 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_052148630.1 | E3 ubiquitin-protein ligase RZFP34-like isoform X3 [Oryza glaberrima] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K8Q4 | CHY-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology