Basic Information
Locus ID:
Chr01G031080
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 63516782 | 63522927 | + | Chr01G031080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 299 | 341 | 1.51635E-26 | - |
| Pfam | PF04564 | U-box domain | 295 | 365 | 1.4E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 421 | 459 | 1.9E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 503 | 541 | 4.3E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 370 | 5.1E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 393 | 666 | 9.22E-49 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 504 | 669 | 1.9E-26 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 382 | 503 | 1.3E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 368 | 4.4E-30 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 52 | 165 | 1.5E-7 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 298 | 361 | 7.3E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 628 | 668 | 350.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 583 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 420 | 460 | 6.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 502 | 542 | 0.0025 | IPR000225 |
| SMART | SM00185 | arm_5 | 378 | 418 | 230.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 461 | 501 | 7.4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 554 | 596 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 431 | 473 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 513 | 555 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 294 | 368 | 44.566402 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| Coils | Coil | Coil | 671 | 691 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6S9A7 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G30150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology