Basic Information
Locus ID:
Chr01G030870
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein of unknown function (DUF1117)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 63021764 | 63023407 | + | Chr01G030870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 135 | 176 | 2.17833E-22 | - |
| Pfam | PF14369 | zinc-ribbon | 7 | 36 | 9.7E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 192 | 275 | 1.0E-25 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 134 | 176 | 2.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 181 | 5.96E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 182 | 3.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 175 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 176 | 12.592549 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039786725.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0P0X5 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9KG505300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology