Basic Information
Locus ID:
Chr01G029820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 61115988 | 61126930 | - | Chr01G029820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 833 | 1092 | 6.92E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 662 | 4.03E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 795 | 1100 | 3.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 326 | 568 | 1.3E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 569 | 682 | 4.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 998 | 1039 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 17.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 8.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 1.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 825 | 862 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 949 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.233999 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 949 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 934 | 948 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5I9 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology