Basic Information
Locus ID:
Chr01G029030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 59888716 | 59890237 | - | Chr01G029030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 31 | 72 | 2.87436E-23 | - |
| Pfam | PF04564 | U-box domain | 27 | 98 | 1.1E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 101 | 1.15E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 202 | 419 | 1.36E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 99 | 2.7E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 123 | 422 | 3.9E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 30 | 93 | 7.0E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 100 | 37.764061 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004985053.1 | U-box domain-containing protein 21 [Setaria italica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6TJU2 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G08820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology