halophFGD

Basic Information

Locus ID: Chr01G027080

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Speckle-type POZ protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000001	56018145	56019032	-	Chr01G027080

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	50	89	1.11128E-7	IPR002083
Pfam	PF00651	BTB/POZ domain	215	274	3.4E-6	IPR000210
SUPERFAMILY	SSF49599	TRAF domain-like	56	89	1.96E-8	-
SUPERFAMILY	SSF54695	POZ domain	178	275	1.1E-10	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	166	276	2.9E-14	IPR011333
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	47	96	1.5E-6	IPR008974
MobiDBLite	mobidb-lite	consensus disorder prediction	27	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	47	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G19000.1	BTB-POZ and MATH domain 1.
RefSeq	XP_039832722.1	BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum]
Swiss-Prot	Q8L765	BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1
TrEMBL	A0A5J9WDW9	BTB domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05742 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for Chr01G027080.