Basic Information
Locus ID:
Chr01G026420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 54426721 | 54427182 | - | Chr01G026420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48170.1 | F-box family protein. encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. | 0 |
| RefSeq | XP_044979404.1 | F-box protein SNE [Hordeum vulgare subsp. vulgare] | 0 |
| Q9LUB6 | F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1 | 0 | |
| TrEMBL | A0A835C0A5 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_025535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37440 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20724 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038108 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51206, Sbi_jg60513 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24474 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl80846 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016187, gene:ENSEOMG00000038760 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0003230, CQ.Regalona.r1.9BG0019250 |
| Apiaceae | Apium graveolens | 2 | Ag11G03239, Ag2G00106 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G003910, scaffold000703G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697991, gene-LOC108511003 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G18712, Ftri8G30138 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005063m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g069380.2N, BniB04g006110.2N, BniB07g037130.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2278 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2369 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g38690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031904 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4653, CH01.5230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0237330, gene-QOZ80_3BG0290760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0399750.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016555, gene-QYE76_070134 |
| Poaceae | Oryza coarctata | 2 | Oco05G005370, Oco06G005540 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G448100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026420, Chr04G002070, Chr07G009170, Chr12G012980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G446000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005980, gene_TRIDC4BG045640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G042900.1.cds1, TraesCS4B02G263400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb008130_P001, Zm00001eb401080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2618, nbis-gene-4196 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1872, Zma_g4229 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2128, evm.TU.LG23.370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1620, evm.TU.Scaffold_9_RagTag.1473 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12106, nbisL1-mrna-20625 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1256, nbisL1-mrna-8393 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10897 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.369, add.evm.TU.utg000006l.405 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012999 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20877, nbisL1-mrna-22372 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15554 |
| Salicaceae | Populus euphratica | 2 | populus_peu26900, populus_peu26910 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618851, gene-LOC132642533 |
| Solanaceae | Solanum chilense | 2 | SOLCI000893600, SOLCI005979400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020124, gene-LOC107025435 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_144, gene_14580 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1893, TC03G0164 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23080.v3.1 |