Basic Information
Locus ID:
Chr01G024860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 49954131 | 49955083 | - | Chr01G024860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 62 | 2.2E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 67 | 9.89E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 76 | 1.8E-12 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 60 | 3.3E-4 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 226 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29340.1 | plant U-box 17. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. | 0 |
| RefSeq | XP_044970662.1 | U-box domain-containing protein 19-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9C7R6 | U-box domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=PUB17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XQ90 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr01G024860.