Basic Information
Locus ID:
Chr01G024630
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 49370437 | 49376007 | + | Chr01G024630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 116 | 174 | 8.7E-12 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 425 | 693 | 2.5E-36 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 3.2E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 694 | 3.55E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 247 | 3.36E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 501 | 708 | 1.2E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 257 | 7.5E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 384 | 500 | 6.6E-23 | - |
| SMART | SM00369 | LRR_typ_2 | 92 | 117 | 64.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 161 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 186 | 8.1 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 423 | 697 | 33.021984 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 188 | 210 | 7.21141 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 162 | 7.758159 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 429 | 452 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_039785771.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Panicum virgatum] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WD82 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_06202 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology