Basic Information
Locus ID:
Chr01G024620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 49264773 | 49265337 | - | Chr01G024620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 36 | 86 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 92 | 6.25E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 91 | 1.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 85 | 7.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 86 | 11.781134 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034572608.1 | probable E3 ubiquitin-protein ligase ATL45 [Setaria viridis] | 0 |
| TrEMBL | A0A4U6T5E8 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G379000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3385, BH01.3682, CH01.3973 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0276980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178480.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067425 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g28040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G337000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G024620 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG051090 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352900.1.cds1, TraesCS2B02G370700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb392800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3416 |