Basic Information
Locus ID:
Chr01G018920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 25824736 | 25835326 | + | Chr01G018920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1116 | 1506 | 1.25703E-102 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1162 | 1508 | 1.6E-77 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1107 | 1501 | 1.15E-91 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 110 | 531 | 1.83E-32 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 540 | 1.3E-45 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1390 | 1506 | 2.3E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1063 | 1279 | 1.4E-36 | - |
| SMART | SM00119 | hect_3 | 1126 | 1508 | 3.2E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1128 | 1508 | 61.590096 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 824 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039837940.1 | E3 ubiquitin-protein ligase UPL4-like [Panicum virgatum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9U7X4 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_35894 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology