Basic Information
Locus ID:
Chr01G017220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PHD-like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 23209346 | 23213956 | - | Chr01G017220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17734 | BRCT_Bard1_rpt1 | 744 | 818 | 6.74898E-26 | - |
| CDD | cd15571 | ePHD | 581 | 697 | 5.55997E-17 | - |
| Pfam | PF16589 | BRCT domain, a BRCA1 C-terminus domain | 853 | 964 | 3.5E-9 | IPR001357 |
| Pfam | PF13771 | PHD-like zinc-binding domain | 619 | 697 | 2.5E-8 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 15 | 53 | 3.4E-10 | - |
| Pfam | PF00533 | BRCA1 C Terminus (BRCT) domain | 747 | 817 | 9.9E-8 | IPR001357 |
| SUPERFAMILY | SSF52113 | BRCT domain | 855 | 963 | 4.58E-10 | IPR036420 |
| SUPERFAMILY | SSF52113 | BRCT domain | 744 | 837 | 1.7E-23 | IPR036420 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 77 | 1.88E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 86 | 5.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 575 | 700 | 8.4E-21 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 741 | 846 | 1.1E-28 | IPR036420 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 852 | 959 | 1.2E-19 | IPR036420 |
| SMART | SM00292 | BRCT_7 | 853 | 959 | 0.014 | IPR001357 |
| SMART | SM00184 | ring_2 | 16 | 53 | 1.3E-7 | IPR001841 |
| SMART | SM00292 | BRCT_7 | 737 | 820 | 1.1E-10 | IPR001357 |
| SMART | SM00184 | ring_2 | 651 | 697 | 17.0 | IPR001841 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 851 | 964 | 13.17268 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 54 | 12.430266 | IPR001841 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 578 | 698 | 19.410969 | IPR034732 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 751 | 830 | 13.6178 | IPR001357 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 31 | 40 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 196 | - | - |
| Coils | Coil | Coil | 321 | 341 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21070.1 | breast cancer susceptibility1. Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. | 0 |
| RefSeq | XP_002440053.1 | protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Sorghum bicolor] | 0 |
| Q8RXD4 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UA94 | RING-type E3 ubiquitin transferase BRCA1 OS=Eragrostis curvula OX=38414 GN=EJB05_36857 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22309, jg35444, jg8668 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14361, gene_5282, gene_5286, gene_651 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016382, Ah029205 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g165610, BVRB_8g187360 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1166, Sbi_jg35422, Sbi_jg40566, Sbi_jg50593 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2150, Seu_jg3548 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018107, GOSA_00024437 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl45218, Sgl45235, Sgl50015, Sgl74208, Sgl74211, Sgl77638 ... |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005554, gene:ENSEOMG00000033335 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0011830, CQ.Regalona.r1.7BG0013890 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015990, pistato.v30075910 |
| Apiaceae | Apium graveolens | 4 | Ag2G01296, Ag2G01298, Ag7G00035, Ag8G00748 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020500, scaffold009984G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703717, gene-LOC103716250 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.154.V1.1, AsparagusV1_07.1985.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G21678, Ftri17G00307, Ftri17G28730, Ftri6G27338 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04020.1, AT4G21070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006912m.g.v1.0, Thhalv10024364m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02860.v2.2, Sp7g19160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g001490.2N, BniB03g000680.2N, BniB03g022240.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1356 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1420 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04530 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate04g00810, gene.Thate04g16490, gene.Thate04g16500 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-6366, nbisL1-mrna-9698, nbisL1-mrna-9699 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1121, evm.TU.LG12.155 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024587, Pov_00038530 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24930, Lb4G26026 |
| Poaceae | Echinochloa crus-galli | 8 | AH05.1787, AH05.1988, AH09.1535, BH05.1954, BH05.2129 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_4AG0310980, gene-QOZ80_4BG0342190 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0070230.1, HORVU.MOREX.r3.1HG0078370.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_013937, gene-QYE76_013938, gene-QYE76_014832 ... |
| Poaceae | Oryza coarctata | 5 | Oco07G010570, Oco08G010310, Oco09G012620, Oco10G012700 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os04g43300.1, LOC_Os05g40810.1, LOC_Os05g43610.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G157200, gene-BS78_09G180200 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0302108, Pt_Chr0302132, Pt_Chr0504246, Pt_Chr0504250 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G017220, Chr12G019500, Chr18G012490, Chr18G013560 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G493200, Tel1E01G536800, Tel2E01G283000 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG045340, gene_TRIDC1AG048940 ... |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G304700.1, TraesCS1A02G329600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb077450_P001, Zm00001eb245990_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-14394, nbis-gene-14395, nbis-gene-25341 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21605, Zma_g26893, Zma_g28465 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.1329, evm.TU.LG01.545, evm.TU.LG03.917 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g01130, gene.Posoc10g05060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.858, evm.TU.Scaffold_5_RagTag.1128 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11597, nbisL1-mrna-25027 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4874, nbisL1-mrna-6143 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19222 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.396, evm.TU.utg000022l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013168, Maker00016219 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-59, nbisL1-mrna-9896 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10290, nbisL1-mrna-19833 |
| Salicaceae | Populus euphratica | 2 | populus_peu00932, populus_peu30745 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605718, gene-LOC132610669, gene-LOC132611460 |
| Solanaceae | Solanum chilense | 3 | SOLCI000661100, SOLCI002722200, SOLCI004840000 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107005400, gene-LOC107018841, gene-LOC107022026 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.253_chr01_-, gene_9697 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0588, TC06G1111 |
| Zosteraceae | Zostera marina | 3 | Zosma01g38440.v3.1, Zosma03g23680.v3.1, Zosma05g29400.v3.1 |