Basic Information
Locus ID:
Chr01G016200
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 22110494 | 22112383 | - | Chr01G016200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 139 | 272 | 6.28613E-17 | - |
| Pfam | PF17862 | AAA+ lid domain | 294 | 329 | 1.1E-7 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 141 | 271 | 7.3E-32 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 100 | 335 | 3.61E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 99 | 362 | 2.2E-82 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 273 | 359 | 2.2E-82 | - |
| SMART | SM00382 | AAA_5 | 137 | 274 | 2.2E-13 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 244 | 263 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 352 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9PE36 | AAA domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology