Basic Information
Locus ID:
Chr01G014620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Calcineurin B-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 20450242 | 20452083 | + | Chr01G014620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 106 | 171 | 3.50021E-8 | IPR002048 |
| Pfam | PF13202 | EF hand | 71 | 92 | 0.032 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 105 | 170 | 1.5E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 17 | 199 | 7.75E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 15 | 208 | 8.2E-63 | - |
| SMART | SM00054 | efh_1 | 69 | 97 | 6.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 150 | 178 | 3.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 106 | 134 | 1.3 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 146 | 181 | 9.520128 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 65 | 100 | 10.914899 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 102 | 137 | 12.170192 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 159 | 171 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04370 (VEGF signaling pathway)
map04370 (VEGF signaling pathway)
map04650 (Natural killer cell mediated cytotoxicity)
map04658 (Th1 and Th2 cell differentiation)
map04659 (Th17 cell differentiation)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24270.1 | Calcium-binding EF-hand family protein. encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium. | 0 |
| RefSeq | XP_015637956.1 | calcineurin B-like protein 4 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q75KU4 | Calcineurin B-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7L9VXJ4 | Calcineurin B-like protein OS=Cynodon dactylon x Cynodon transvaalensis OX=1920021 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology