Basic Information
Locus ID:
Chr01G013860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 19868088 | 19869176 | - | Chr01G013860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 182 | 223 | 2.86315E-24 | - |
| Pfam | PF13639 | Ring finger domain | 181 | 223 | 7.8E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 10 | 50 | 2.0E-15 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 244 | 348 | 5.0E-40 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 230 | 7.73E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 229 | 3.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 222 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 223 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_039836280.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6T0E3 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM05G10130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology