Basic Information
Locus ID:
Chr01G013490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 19510804 | 19512859 | + | Chr01G013490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 201 | 355 | 2.67333E-75 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 174 | 4.19511E-59 | - |
| Pfam | PF00190 | Cupin | 9 | 157 | 1.5E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 341 | 1.3E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 6 | 347 | 1.02E-47 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 180 | 2.3E-29 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 359 | 2.4E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 160 | 1.8E-29 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 198 | 342 | 1.5E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 8.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 214 | 234 | 8.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 8.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 297 | 315 | 8.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 319 | 336 | 8.9E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_039798952.1 | 12S seed storage globulin 1-like [Panicum virgatum] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U4X8 | Cupin type-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_34306 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology